Index

A

actors (cedalion.plots.OptodeSelector attribute) add() (cedalion.dataclasses.accessors.PointsAccessor method) add_hrf_to_od() (in module cedalion.sim.synthetic_hrf) add_hrf_to_vertices() (in module cedalion.sim.synthetic_hrf) add_number_to_name() (in module cedalion.io.snirf) adj (cedalion.dataclasses.geometry.PycortexSurface property) affine_transform_from_numpy() (in module cedalion.dataclasses.geometry) align_and_snap_to_scalp() (cedalion.imagereco.forward_model.TwoSurfaceHeadModel method), [1] apply_mask() (in module cedalion.xrutils)

apply_transform() (cedalion.dataclasses.accessors.PointsAccessor method) (cedalion.dataclasses.geometry.PycortexSurface method) (cedalion.dataclasses.geometry.Surface method) (cedalion.dataclasses.geometry.TrimeshSurface method) (cedalion.dataclasses.geometry.VTKSurface method) (cedalion.imagereco.forward_model.TwoSurfaceHeadModel method), [1] aux_obj (cedalion.dataclasses.recording.Recording attribute) aux_ts (cedalion.dataclasses.recording.Recording attribute) avg_edge_length (cedalion.dataclasses.geometry.PycortexSurface property)

B

beer_lambert() (in module cedalion.nirs) BFI (cedalion.io.snirf.DataTypeLabel attribute) brain (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] build() (cedalion.geometry.landmarks.LandmarksBuilder1010 method) build_blob() (in module cedalion.sim.synthetic_hrf)

build_labeled_points() (in module cedalion.dataclasses.schemas) build_stim_array() (in module cedalion.models.glm.design_matrix) build_stim_dataframe() (in module cedalion.dataclasses.schemas) build_stim_df() (in module cedalion.sim.synthetic_hrf) build_timeseries() (in module cedalion.dataclasses.schemas)

C

calculate_cos_sin_mtx() (in module cedalion.sigdecomp.ERBM) cedalion module cedalion.data module cedalion.dataclasses module cedalion.dataclasses.accessors module cedalion.dataclasses.geometry module cedalion.dataclasses.recording module cedalion.dataclasses.schemas module cedalion.datasets module cedalion.geometry module cedalion.geometry.landmarks module cedalion.geometry.photogrammetry module cedalion.geometry.photogrammetry.processors module cedalion.geometry.registration module cedalion.geometry.segmentation module cedalion.geometry.utils module cedalion.imagereco module cedalion.imagereco.forward_model module cedalion.imagereco.solver module cedalion.imagereco.tissue_properties module cedalion.imagereco.utils module cedalion.io module cedalion.io.anatomy module cedalion.io.bids module cedalion.io.forward_model module cedalion.io.photogrammetry module cedalion.io.probe_geometry module cedalion.io.snirf module cedalion.models module cedalion.models.glm module cedalion.models.glm.basis_functions module cedalion.models.glm.design_matrix module cedalion.models.glm.solve module cedalion.nirs module cedalion.physunits module cedalion.plots module cedalion.sigdecomp module

cedalion.sigdecomp.dummy module cedalion.sigdecomp.ERBM module cedalion.sigdecomp.ICA_EBM module cedalion.sigproc module cedalion.sigproc.frequency module cedalion.sigproc.motion_correct module cedalion.sigproc.quality module cedalion.sigproc.tasks module cedalion.sim module cedalion.sim.synthetic_hrf module cedalion.tasks module cedalion.typing module cedalion.validators module cedalion.vtktutils module cedalion.xrutils module CedalionAccessor (class in cedalion.dataclasses.accessors) cell_coordinates() (in module cedalion.geometry.segmentation) (in module cedalion.io.anatomy) cfg_colors (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) channel_distances() (in module cedalion.nirs) check_dimensionality() (in module cedalion.validators) closest_short_channel() (in module cedalion.models.glm.design_matrix) cluster_circles (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) cluster_colors (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) cluster_coords (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) cnstd_and_gain() (in module cedalion.sigdecomp.ERBM) color (cedalion.plots.OptodeSelector attribute) ColoredStickerProcessor (class in cedalion.geometry.photogrammetry.processors) ColoredStickerProcessorDetails (class in cedalion.geometry.photogrammetry.processors) common_labels() (cedalion.dataclasses.accessors.PointsAccessor method) compute_fluence() (cedalion.imagereco.forward_model.ForwardModel method) compute_fluence_mcx() (cedalion.imagereco.forward_model.ForwardModel method) compute_fluence_nirfaster() (cedalion.imagereco.forward_model.ForwardModel method) compute_sensitivity() (cedalion.imagereco.forward_model.ForwardModel method), [1] compute_sensitivity_all() (cedalion.imagereco.forward_model.ForwardModel method) compute_stacked_sensitivity() (cedalion.imagereco.forward_model.ForwardModel static method) compute_window() (in module cedalion.sigproc.motion_correct) conditions() (cedalion.dataclasses.accessors.StimAccessor method) connected (cedalion.dataclasses.geometry.PycortexSurface property) construct_afni_gamma_basis() (in module cedalion.models.glm.design_matrix) construct_basis_functions() (in module cedalion.models.glm.design_matrix) construct_gaussian_basis() (in module cedalion.models.glm.design_matrix) construct_individual_basis() (in module cedalion.models.glm.design_matrix) construct_modified_gamma_basis() (in module cedalion.models.glm.design_matrix) construct_modified_gamma_deriv_basis() (in module cedalion.models.glm.design_matrix) convolve() (in module cedalion.xrutils) coords (cedalion.dataclasses.schemas.DataArraySchema attribute) cotangent_weights (cedalion.dataclasses.geometry.PycortexSurface property) create_mock_activation_below_point() (in module cedalion.imagereco.utils) crs (cedalion.dataclasses.accessors.PointsAccessor property) (cedalion.dataclasses.geometry.Surface attribute) (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute) (cedalion.imagereco.forward_model.TwoSurfaceHeadModel property) CSF (cedalion.imagereco.tissue_properties.TissueType attribute) CW_AMPLITUDE (cedalion.io.snirf.DataType attribute) CW_FLUORESCENCE_AMPLITUDE (cedalion.io.snirf.DataType attribute)

D

DataArraySchema (class in cedalion.dataclasses.schemas) DataType (class in cedalion.io.snirf) DataTypeLabel (class in cedalion.io.snirf) DCS_BFI (cedalion.io.snirf.DataType attribute) DCS_G2 (cedalion.io.snirf.DataType attribute) decimate() (cedalion.dataclasses.geometry.PycortexSurface method) (cedalion.dataclasses.geometry.TrimeshSurface method) (cedalion.dataclasses.geometry.VTKSurface method) denormalize_measurement_list() (in module cedalion.io.snirf) detect_baselineshift() (in module cedalion.sigproc.quality)

detect_outliers() (in module cedalion.sigproc.quality) detect_outliers_grad() (in module cedalion.sigproc.quality) detect_outliers_std() (in module cedalion.sigproc.quality) DETECTOR (cedalion.dataclasses.geometry.PointType attribute) detector_labels (cedalion.dataclasses.recording.Recording property) dims (cedalion.dataclasses.schemas.DataArraySchema attribute) DM (cedalion.imagereco.tissue_properties.TissueType attribute) DMEAN (cedalion.io.snirf.DataTypeLabel attribute) DOD (cedalion.io.snirf.DataTypeLabel attribute) DSKEW (cedalion.io.snirf.DataTypeLabel attribute) DVAR (cedalion.io.snirf.DataTypeLabel attribute)

E

enable_picking() (cedalion.plots.OptodeSelector method), [1]

ERBM() (in module cedalion.sigdecomp.ERBM)

F

face_areas (cedalion.dataclasses.geometry.PycortexSurface property) face_normals (cedalion.dataclasses.geometry.PycortexSurface property) FD_AC_AMPLITUDE (cedalion.io.snirf.DataType attribute) FD_FLUORESCENCE_AMPLITUDE (cedalion.io.snirf.DataType attribute) FD_FLUORESCENCE_PHASE (cedalion.io.snirf.DataType attribute) FD_PHASE (cedalion.io.snirf.DataType attribute) find_spread_points() (in module cedalion.geometry.registration) find_surface_normal() (cedalion.plots.OptodeSelector method) fit() (in module cedalion.models.glm.solve)

fix_vertex_normals() (cedalion.dataclasses.geometry.TrimeshSurface method) ForwardModel (class in cedalion.imagereco.forward_model) freq_filter() (cedalion.dataclasses.accessors.CedalionAccessor method) (in module cedalion.sigproc.frequency) from_segmentation() (cedalion.imagereco.forward_model.TwoSurfaceHeadModel class method) from_trimeshsurface() (cedalion.dataclasses.geometry.PycortexSurface class method) (cedalion.dataclasses.geometry.VTKSurface class method) from_vtksurface() (cedalion.dataclasses.geometry.PycortexSurface class method) (cedalion.dataclasses.geometry.TrimeshSurface class method)

G

Gamma (class in cedalion.models.glm.basis_functions) GaussianKernels (class in cedalion.models.glm.basis_functions) gen_xform_from_pts() (in module cedalion.geometry.registration) generate_component_names() (in module cedalion.models.glm.basis_functions) generate_hrf() (in module cedalion.sim.synthetic_hrf) geo2d (cedalion.dataclasses.recording.Recording attribute) geo3d (cedalion.dataclasses.recording.Recording attribute) geo3d_from_scan() (in module cedalion.geometry.photogrammetry.processors) geodesic_distance() (cedalion.dataclasses.geometry.PycortexSurface method) geodesic_path() (cedalion.dataclasses.geometry.PycortexSurface method) geometry_from_probe() (in module cedalion.io.snirf) get() (in module cedalion.data) get_colin27_headmodel() (in module cedalion.datasets) get_colin27_segmentation() (in module cedalion.datasets) get_colors() (in module cedalion.sim.synthetic_hrf) get_extinction_coefficients() (in module cedalion.nirs)

get_fingertapping() (in module cedalion.datasets) get_fingertapping_snirf_path() (in module cedalion.datasets) get_imagereco_example_fluence() (in module cedalion.datasets) get_mask() (cedalion.dataclasses.recording.Recording method) get_multisubject_fingertapping_path() (in module cedalion.datasets) get_multisubject_fingertapping_snirf_paths() (in module cedalion.datasets) get_other_dim() (in module cedalion.models.glm.basis_functions) get_photogrammetry_example_scan() (in module cedalion.datasets) get_snirf_test_data() (in module cedalion.datasets) get_ss_regressors() (in module cedalion.models.glm.design_matrix) get_third_dimension() (in module cedalion.models.glm.design_matrix) get_timeseries() (cedalion.dataclasses.recording.Recording method) get_timeseries_type() (cedalion.dataclasses.recording.Recording method) get_tissue_properties() (in module cedalion.imagereco.tissue_properties) get_vertex_normals() (cedalion.dataclasses.geometry.PycortexSurface method) (cedalion.dataclasses.geometry.TrimeshSurface method) GM (cedalion.imagereco.tissue_properties.TissueType attribute)

H

H2O (cedalion.io.snirf.DataTypeLabel attribute) has_channel() (in module cedalion.validators) has_positions() (in module cedalion.validators) has_time() (in module cedalion.validators) has_wavelengths() (in module cedalion.validators) hash_channel_wise_regressor() (in module cedalion.models.glm.solve) HBO (cedalion.io.snirf.DataTypeLabel attribute) HBR (cedalion.io.snirf.DataTypeLabel attribute) HBT (cedalion.io.snirf.DataTypeLabel attribute) head_model (cedalion.dataclasses.recording.Recording attribute)

HRF_BFI (cedalion.io.snirf.DataTypeLabel attribute) HRF_DMEAN (cedalion.io.snirf.DataTypeLabel attribute) HRF_DOD (cedalion.io.snirf.DataTypeLabel attribute) HRF_DSKEW (cedalion.io.snirf.DataTypeLabel attribute) HRF_DVAR (cedalion.io.snirf.DataTypeLabel attribute) HRF_HBO (cedalion.io.snirf.DataTypeLabel attribute) HRF_HBR (cedalion.io.snirf.DataTypeLabel attribute) HRF_HBT (cedalion.io.snirf.DataTypeLabel attribute) hrf_to_long_channels() (in module cedalion.sim.synthetic_hrf) hrfs_from_image_reco() (in module cedalion.sim.synthetic_hrf)

I

ICA_EBM() (in module cedalion.sigdecomp.ICA_EBM) icp_with_full_transform() (in module cedalion.geometry.registration) id_motion() (in module cedalion.sigproc.quality) id_motion_refine() (in module cedalion.sigproc.quality) int2od() (in module cedalion.nirs) (in module cedalion.sigproc.tasks)

inv_sqrtmH() (in module cedalion.sigdecomp.ERBM) (in module cedalion.sigdecomp.ICA_EBM) is_quantified() (in module cedalion.validators) iter_design_matrix() (in module cedalion.models.glm.solve)

K

kdtree (cedalion.dataclasses.geometry.Surface property)

L

labels (cedalion.plots.OptodeSelector attribute) labels_and_positions() (in module cedalion.io.snirf) LANDMARK (cedalion.dataclasses.geometry.PointType attribute) landmarks (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] LandmarksBuilder1010 (class in cedalion.geometry.landmarks)

laplace_operator (cedalion.dataclasses.geometry.PycortexSurface property) lfc() (in module cedalion.sigdecomp.ERBM) LIPID (cedalion.io.snirf.DataTypeLabel attribute) load() (cedalion.imagereco.forward_model.TwoSurfaceHeadModel class method) (cedalion.imagereco.forward_model.TwoSurfaceHeadModel method) load_Adot() (in module cedalion.io.forward_model)

M

m_rot() (in module cedalion.geometry.utils) m_scale1() (in module cedalion.geometry.utils) m_scale3() (in module cedalion.geometry.utils) m_trans() (in module cedalion.geometry.utils) make_design_matrix() (in module cedalion.models.glm.design_matrix) make_drift_regressors() (in module cedalion.models.glm.design_matrix) make_hrf_regressors() (in module cedalion.models.glm.design_matrix) map_segmentation_mask_to_surface() (in module cedalion.imagereco.utils) mask() (in module cedalion.xrutils) masks (cedalion.dataclasses.recording.Recording attribute) max_corr_short_channel() (in module cedalion.models.glm.design_matrix) mean_amp() (in module cedalion.sigproc.quality) measurement_list_from_stacked() (in module cedalion.io.snirf) measurement_list_to_dataframe() (in module cedalion.io.snirf) mesh (cedalion.dataclasses.geometry.PycortexSurface attribute) (cedalion.dataclasses.geometry.Surface attribute) (cedalion.dataclasses.geometry.TrimeshSurface attribute) (cedalion.dataclasses.geometry.VTKSurface attribute) meta_data (cedalion.dataclasses.recording.Recording attribute) meta_data_tags_to_dict() (in module cedalion.io.snirf) minEnclosingCircle() (in module cedalion.geometry.photogrammetry.processors) module cedalion cedalion.data cedalion.dataclasses cedalion.dataclasses.accessors cedalion.dataclasses.geometry cedalion.dataclasses.recording cedalion.dataclasses.schemas cedalion.datasets cedalion.geometry cedalion.geometry.landmarks cedalion.geometry.photogrammetry cedalion.geometry.photogrammetry.processors cedalion.geometry.registration cedalion.geometry.segmentation cedalion.geometry.utils cedalion.imagereco cedalion.imagereco.forward_model cedalion.imagereco.solver cedalion.imagereco.tissue_properties cedalion.imagereco.utils cedalion.io cedalion.io.anatomy cedalion.io.bids cedalion.io.forward_model cedalion.io.photogrammetry cedalion.io.probe_geometry cedalion.io.snirf cedalion.models cedalion.models.glm cedalion.models.glm.basis_functions cedalion.models.glm.design_matrix cedalion.models.glm.solve cedalion.nirs cedalion.physunits cedalion.plots cedalion.sigdecomp cedalion.sigdecomp.dummy cedalion.sigdecomp.ERBM cedalion.sigdecomp.ICA_EBM cedalion.sigproc cedalion.sigproc.frequency cedalion.sigproc.motion_correct cedalion.sigproc.quality cedalion.sigproc.tasks cedalion.sim cedalion.sim.synthetic_hrf cedalion.tasks cedalion.typing cedalion.validators cedalion.vtktutils cedalion.xrutils

motion_correct_PCA() (in module cedalion.sigproc.motion_correct) motion_correct_PCA_recurse() (in module cedalion.sigproc.motion_correct) motion_correct_spline() (in module cedalion.sigproc.motion_correct) motion_correct_splineSG() (in module cedalion.sigproc.motion_correct) MUA (cedalion.io.snirf.DataTypeLabel attribute) MUSP (cedalion.io.snirf.DataTypeLabel attribute)

N

nfaces (cedalion.dataclasses.geometry.PycortexSurface property) (cedalion.dataclasses.geometry.Surface property) (cedalion.dataclasses.geometry.TrimeshSurface property) (cedalion.dataclasses.geometry.VTKSurface property) norm() (in module cedalion.xrutils)

normal_hrf() (in module cedalion.imagereco.utils) normals (cedalion.plots.OptodeSelector attribute) nvertices (cedalion.dataclasses.geometry.PycortexSurface property) (cedalion.dataclasses.geometry.Surface property) (cedalion.dataclasses.geometry.TrimeshSurface property) (cedalion.dataclasses.geometry.VTKSurface property)

O

od2conc() (in module cedalion.nirs) (in module cedalion.sigproc.tasks) on_pick() (cedalion.plots.OptodeSelector method), [1] opt_fid_to_xr() (in module cedalion.io.photogrammetry)

OptodeSelector (class in cedalion.plots) order_ref_points_6() (in module cedalion.geometry.landmarks) OTHER (cedalion.imagereco.tissue_properties.TissueType attribute) other_dim() (in module cedalion.xrutils)

P

pad_time_axis() (in module cedalion.models.glm.design_matrix) parse_data_type() (in module cedalion.io.snirf) parse_data_type_label() (in module cedalion.io.snirf) pca() (in module cedalion.geometry.photogrammetry.processors) pinv() (in module cedalion.xrutils) plot() (cedalion.geometry.landmarks.LandmarksBuilder1010 method) (cedalion.plots.OptodeSelector method), [1] plot3d() (in module cedalion.plots) plot_blob() (in module cedalion.sim.synthetic_hrf) plot_cluster_circles() (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails method) plot_labeled_points() (in module cedalion.plots) plot_montage3D() (in module cedalion.plots) plot_surface() (in module cedalion.plots) plot_vector_field() (in module cedalion.plots) plot_vertex_colors() (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails method) plot_vertex_colors1() (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails method) plotter (cedalion.plots.OptodeSelector attribute)

points (cedalion.plots.OptodeSelector attribute) PointsAccessor (class in cedalion.dataclasses.accessors) PointType (class in cedalion.dataclasses.geometry) polys (cedalion.dataclasses.geometry.SimpleMesh attribute) ppts (cedalion.dataclasses.geometry.PycortexSurface property) pre_processing() (in module cedalion.sigdecomp.ERBM) (in module cedalion.sigdecomp.ICA_EBM) predict() (in module cedalion.models.glm.solve) process() (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessor method) (cedalion.geometry.photogrammetry.processors.ScanProcessor method) PROCESSED (cedalion.io.snirf.DataType attribute) prune_ch() (in module cedalion.sigproc.quality) pseudo_inverse_stacked() (in module cedalion.imagereco.solver) psp() (in module cedalion.sigproc.quality) pts (cedalion.dataclasses.geometry.SimpleMesh attribute) PycortexSurface (class in cedalion.dataclasses.geometry) pyvista_polydata_to_trimesh() (in module cedalion.vtktutils)

R

RAW_NIRX (cedalion.io.snirf.DataTypeLabel attribute) RAW_SATORI (cedalion.io.snirf.DataTypeLabel attribute) read_aux() (in module cedalion.io.snirf) read_data_elements() (in module cedalion.io.snirf) read_digpts() (in module cedalion.io.probe_geometry) read_einstar() (in module cedalion.io.photogrammetry) read_einstar_obj() (in module cedalion.io.probe_geometry) read_events_from_tsv() (in module cedalion.io.bids) read_mrk_json() (in module cedalion.io.probe_geometry) read_nirs_element() (in module cedalion.io.snirf)

read_photogrammetry_einstar() (in module cedalion.io.photogrammetry) read_segmentation_masks() (in module cedalion.io.anatomy) read_snirf() (in module cedalion.io.snirf) Recording (class in cedalion.dataclasses.recording) reduce_ndim_sourceLabels() (in module cedalion.io.snirf) register_icp() (in module cedalion.geometry.registration) register_trans_rot() (in module cedalion.geometry.registration) register_trans_rot_isoscale() (in module cedalion.geometry.registration) remove() (cedalion.dataclasses.accessors.PointsAccessor method) rename() (cedalion.dataclasses.accessors.PointsAccessor method) rename_events() (cedalion.dataclasses.accessors.StimAccessor method)

S

sampling_rate (cedalion.dataclasses.accessors.CedalionAccessor property) sampling_rate() (in module cedalion.sigproc.frequency) save() (cedalion.imagereco.forward_model.TwoSurfaceHeadModel method), [1] save_Adot() (in module cedalion.io.forward_model) scalp (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] scalp_plot() (in module cedalion.plots) ScanProcessor (class in cedalion.geometry.photogrammetry.processors) sci() (in module cedalion.sigproc.quality) sd_dist() (in module cedalion.sigproc.quality) (in module cedalion.sigproc.tasks) segmentation_masks (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] set_crs() (cedalion.dataclasses.accessors.PointsAccessor method) set_mask() (cedalion.dataclasses.recording.Recording method) set_timeseries() (cedalion.dataclasses.recording.Recording method) SimpleMesh (class in cedalion.dataclasses.geometry) simplified_ppval() (in module cedalion.sigdecomp.ERBM) (in module cedalion.sigdecomp.ICA_EBM)

SKIN (cedalion.imagereco.tissue_properties.TissueType attribute) SKULL (cedalion.imagereco.tissue_properties.TissueType attribute) smooth() (cedalion.dataclasses.geometry.TrimeshSurface method) snap() (cedalion.dataclasses.geometry.Surface method) snr() (in module cedalion.sigproc.quality) (in module cedalion.sigproc.tasks) SOURCE (cedalion.dataclasses.geometry.PointType attribute) source_labels (cedalion.dataclasses.recording.Recording property) split_frequency_bands() (in module cedalion.sigdecomp.dummy) split_long_short_channels() (in module cedalion.nirs) stim (cedalion.dataclasses.recording.Recording attribute) stim_to_dataframe() (in module cedalion.io.snirf) StimAccessor (class in cedalion.dataclasses.accessors) surface (cedalion.plots.OptodeSelector attribute) Surface (class in cedalion.dataclasses.geometry) surface_from_segmentation() (in module cedalion.geometry.segmentation) surface_gradient() (cedalion.dataclasses.geometry.PycortexSurface method) symdecor() (in module cedalion.sigdecomp.ICA_EBM)

T

t_ijk2ras (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] t_ras2ijk (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] task() (in module cedalion.tasks) TDG_AMPLITUDE (cedalion.io.snirf.DataType attribute) TDG_FLUORESCENCE_AMPLITUDE (cedalion.io.snirf.DataType attribute) TDM_AMPLITUDE (cedalion.io.snirf.DataType attribute) TDM_FLUORESCENCE_AMPLITUDE (cedalion.io.snirf.DataType attribute) TemporalBasisFunction (class in cedalion.models.glm.basis_functions) timeseries (cedalion.dataclasses.recording.Recording attribute)

TissueType (class in cedalion.imagereco.tissue_properties) to_dict() (in module cedalion.models.glm.basis_functions) to_epochs() (cedalion.dataclasses.accessors.CedalionAccessor method) to_homogeneous() (cedalion.dataclasses.accessors.PointsAccessor method) to_unit() (in module cedalion.models.glm.basis_functions) to_xarray() (cedalion.dataclasses.accessors.StimAccessor method) trial_types (cedalion.dataclasses.recording.Recording property) trimesh_to_vtk_polydata() (in module cedalion.vtktutils) TrimeshSurface (class in cedalion.dataclasses.geometry) TwoSurfaceHeadModel (class in cedalion.imagereco.forward_model)

U

units (cedalion.dataclasses.geometry.Surface attribute) UNKNOWN (cedalion.dataclasses.geometry.PointType attribute)

update_normals() (cedalion.plots.OptodeSelector method) update_visualization() (cedalion.plots.OptodeSelector method), [1]

V

validate() (cedalion.dataclasses.schemas.DataArraySchema method) validate_schemas() (in module cedalion.dataclasses.schemas) validate_stim_schema() (in module cedalion.dataclasses.schemas) ValidationError vertex_colors (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) vertex_hue (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) vertex_normals (cedalion.dataclasses.geometry.PycortexSurface property) vertex_sat (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute)

vertex_value (cedalion.geometry.photogrammetry.processors.ColoredStickerProcessorDetails attribute) vertices (cedalion.dataclasses.geometry.PycortexSurface property) (cedalion.dataclasses.geometry.Surface property) (cedalion.dataclasses.geometry.TrimeshSurface property) (cedalion.dataclasses.geometry.VTKSurface property) voxel_to_vertex_brain (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] voxel_to_vertex_scalp (cedalion.imagereco.forward_model.TwoSurfaceHeadModel attribute), [1] VTKSurface (class in cedalion.dataclasses.geometry)

W

wavelengths (cedalion.dataclasses.recording.Recording property)

WM (cedalion.imagereco.tissue_properties.TissueType attribute) write_snirf() (in module cedalion.io.snirf)